STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_5051Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; TPR repeat- containing protein; Tetratricopeptide TPR_4; NB-ARC domain protein; transcriptional regulator domain protein; SMART: Tetratricopeptide domain protein; KEGG: sen:SACE_0488 SARP family transcriptional regulator. (965 aa)    
Predicted Functional Partners:
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.603
Caci_2646
KEGG: fre:Franean1_2313 hypothetical protein.
  
     0.597
Caci_6883
KEGG: fre:Franean1_6151 putative transcriptional regulator.
  
    0.580
Caci_0021
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: fal:FRAAL6347 putative regulatory protein.
  
    0.555
Caci_5050
Hypothetical protein; KEGG: bcj:BCAM2143 cable pilus associated adhesin protein.
       0.547
Caci_0365
PFAM: protein of unknown function DUF742; KEGG: sco:SCO6796 hypothetical protein.
  
    0.524
Caci_0264
SMART: helix-turn-helix domain protein; KEGG: fal:FRAAL0518 putative DNA-binding protein.
  
    0.513
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.513
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.508
Caci_5278
TIGRFAM: rhamnose ABC transporter, periplasmic rhamnose-binding protein; KEGG: sma:SAV_7419 secreted solute-binding lipoprotein.
  
     0.491
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.