STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_5080PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ret:RHE_CH02450 short chain dehydrogenase. (240 aa)    
Predicted Functional Partners:
Caci_7823
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ter:Tery_2914 short chain dehydrogenase.
  
     0.718
Caci_8773
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sgr:SGR_4254 putative short chain dehydrogenase.
  
     0.712
Caci_5766
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: cvi:CV_2707 short chain dehydrogenase.
  
     0.706
Caci_3849
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: amr:AM1_6141 3-oxoacyl-(acyl carrier protein) reductase, putative; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.696
Caci_5774
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bac:BamMC406_3582 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.676
Caci_6561
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: kra:Krad_2036 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.676
Caci_2287
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sma:SAV_6442 hypothetical protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 
 0.672
Caci_3261
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mgi:Mflv_1267 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.672
Caci_6839
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: scl:sce8812 short-chain dehydrogenase.
  
     0.668
Caci_6493
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sco:SCO5086 ketoacyl reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.667
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.