STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_5150KEGG: rha:RHA1_ro02916 hypothetical protein. (634 aa)    
Predicted Functional Partners:
Caci_5149
KEGG: sco:SCO4516 hypothetical protein.
       0.773
Caci_5147
PFAM: domain of unknown function DUF1731; NAD- dependent epimerase/dehydratase; KEGG: sco:SCO2190 hypothetical protein.
       0.546
Caci_5148
Hypothetical protein.
       0.546
Caci_5151
Hypothetical protein; KEGG: glo:Glov_1454 cell surface receptor IPT/TIG domain protein.
       0.539
Caci_5152
PFAM: inositol monophosphatase; KEGG: saq:Sare_4101 histidinol-phosphate phosphatase, putative.
       0.460
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.