STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_5177KEGG: art:Arth_1660 hypothetical protein. (710 aa)    
Predicted Functional Partners:
Caci_5176
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: sco:SCO1088 oxidoreductase.
 
   
 0.932
Caci_5175
Threonine aldolase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sgr:SGR_6518 putative aldolase.
 
   
 0.844
Caci_1190
KEGG: cmi:CMM_0528 putative metal-dependent hydrolase.
  
     0.610
Caci_7828
Transcriptional regulator, PucR family; PFAM: purine catabolism PurC domain protein; KEGG: sgr:SGR_1827 putative PucR-like transcriptional regulator.
  
     0.591
Caci_7567
KEGG: sco:SCO5265 hypothetical protein.
 
     0.583
Caci_3096
PFAM: protein of unknown function DUF861 cupin_3; KEGG: sma:SAV_6269 hypothetical protein.
  
     0.534
Caci_6760
KEGG: lxx:Lxx01020 beta-lactamase related protein.
  
     0.433
Caci_7704
PFAM: protein of unknown function DUF1470; KEGG: sgr:SGR_2243 hypothetical protein.
  
     0.417
Caci_4402
PFAM: protein of unknown function DUF1470; KEGG: sgr:SGR_2243 hypothetical protein.
  
     0.415
Caci_5178
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: fre:Franean1_2863 alcohol dehydrogenase.
       0.414
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.