STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_5185PFAM: protein of unknown function ATP binding; KEGG: saq:Sare_4263 protein of unknown function ATP binding. (195 aa)    
Predicted Functional Partners:
Caci_5184
PFAM: Roadblock/LC7 family protein; KEGG: saq:Sare_0761 roadblock/LC7 family protein.
 
 
 0.973
Caci_5183
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: sgr:SGR_1525 putative sensor-like histidine kinase.
 
     0.910
Caci_1061
PFAM: Roadblock/LC7 family protein; KEGG: sgr:SGR_934 hypothetical protein.
 
 
 0.898
Caci_0364
PFAM: Roadblock/LC7 family protein; KEGG: sma:SAV_1632 hypothetical protein.
 
 
 0.892
Caci_2533
PFAM: Roadblock/LC7 family protein; KEGG: fra:Francci3_4331 hypothetical protein.
 
 
 0.892
Caci_4181
PFAM: Roadblock/LC7 family protein; KEGG: nfa:nfa23520 hypothetical protein.
 
 
 0.892
Caci_2446
PFAM: Roadblock/LC7 family protein; KEGG: sma:SAV_2180 hypothetical protein.
 
 
 0.887
Caci_3315
PFAM: Roadblock/LC7 family protein; KEGG: saq:Sare_0761 roadblock/LC7 family protein.
 
 
 0.887
Caci_3382
PFAM: Roadblock/LC7 family protein; KEGG: sma:SAV_2180 hypothetical protein.
 
 
 0.887
Caci_7863
PFAM: Roadblock/LC7 family protein; KEGG: fra:Francci3_0643 hypothetical protein.
 
 
 0.887
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.