STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_5189PFAM: DSBA oxidoreductase; KEGG: saq:Sare_0436 tetratricopeptide domain- containing protein. (265 aa)    
Predicted Functional Partners:
Caci_1631
SMART: helix-turn-helix domain protein; KEGG: fre:Franean1_1330 XRE family transcriptional regulator.
  
     0.703
Caci_0616
PFAM: Peptidase M9A collagenase domain protein; Peptidase M9 domain; peptidase domain protein; KEGG: sgr:SGR_1615 putative collagenase.
 
    0.647
Caci_7152
PFAM: Peptidase M9A collagenase domain protein; PKD domain containing protein; Peptidase M9 domain; peptidase domain protein; SMART: PKD domain containing protein; KEGG: sco:SCO5912 secreted protease.
 
    0.647
Caci_0442
KEGG: sgr:SGR_7062t hypothetical protein.
 
    0.604
Caci_1089
PFAM: cyclase/dehydrase; KEGG: sma:SAV_2841 cyclase I.
 
     0.591
Caci_8946
KEGG: sgr:SGR_7062t hypothetical protein.
  
     0.540
Caci_8929
KEGG: sgr:SGR_7062t hypothetical protein.
 
    0.534
Caci_6319
PFAM: FAD dependent oxidoreductase; KEGG: saq:Sare_1045 FAD dependent oxidoreductase.
  
    0.473
Caci_6410
Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; Tetratricopeptide TPR_4; transcriptional regulator domain protein; SMART: Tetratricopeptide domain protein; KEGG: sen:SACE_0488 SARP family transcriptional regulator.
  
     0.459
Caci_0730
KEGG: sma:SAV_3235 hypothetical protein.
   
 
 0.430
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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