STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_5201PFAM: histidine kinase dimerisation and phosphoacceptor region; GAF domain protein; ATP-binding region ATPase domain protein; SMART: GAF domain protein; ATP-binding region ATPase domain protein; KEGG: sma:SAV_6476 two-component system sensor kinase. (393 aa)    
Predicted Functional Partners:
Caci_5202
Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sco:SCO1801 two component response regulator.
 
 
 0.956
Caci_0157
Putative phytochrome sensor protein; PFAM: GAF domain protein; histidine kinase dimerisation and phosphoacceptor region; SMART: GAF domain protein; KEGG: sma:SAV_4257 two-component system sensor kinase.
    
0.917
Caci_4282
Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: kra:Krad_1090 two component LuxR family transcriptional regulator.
 
 
 0.803
Caci_8454
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; response regulator receiver; Bacterio-opsin activator HTH domain protein; SMART: regulatory protein LuxR; response regulator receiver; KEGG: sgr:SGR_4366 putative two-component system response regulator.
 
 
 0.796
Caci_4117
GAF sensor hybrid histidine kinase; KEGG: sma:SAV_1085 two-component system sensor kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; GAF domain protein; histidine kinase HAMP region domain protein.
  
 
 0.780
Caci_5203
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sma:SAV_4798 hypothetical protein.
  
    0.780
Caci_5199
Queuosine biosynthesis protein; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).
 
    0.772
Caci_3153
Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver; KEGG: nca:Noca_2943 two component LuxR family transcriptional regulator.
 
 
 0.767
Caci_6284
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; response regulator receiver; SMART: regulatory protein LuxR; response regulator receiver; KEGG: saq:Sare_2136 two component LuxR family transcriptional regulator.
 
 
 0.757
Caci_0094
Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: ace:Acel_0518 two component LuxR family transcriptional regulator.
 
 
 0.755
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.