STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_5212KEGG: tfu:Tfu_2334 hypothetical protein. (299 aa)    
Predicted Functional Partners:
Caci_1745
TIGRFAM: phenylacetate-CoA oxygenase, PaaH subunit; PFAM: phenylacetic acid degradation B; KEGG: sma:SAV_4353 phenylacetate-CoA oxygenase subunit PaaB.
  
 
 0.659
Caci_1398
PFAM: regulatory protein TetR; KEGG: sco:SCO5209 TetR family transcriptional regulator.
  
     0.623
Caci_5400
PFAM: GCN5-related N-acetyltransferase; KEGG: tfu:Tfu_1198 hypothetical protein.
  
     0.577
Caci_3553
KEGG: rha:RHA1_ro03945 hypothetical protein.
  
     0.556
Caci_1931
KEGG: fre:Franean1_2324 hypothetical protein.
  
     0.515
Caci_5121
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: rme:Rmet_3602 transcriptional regulator, MerR family.
 
     0.506
Caci_5261
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: sgr:SGR_993 putative fatty acid oxidation complex alpha-subunit.
 
  
 0.502
Caci_3363
PFAM: acyl-CoA oxidase domain protein; acyl-CoA dehydrogenase domain protein; KEGG: sen:SACE_7372 acyl-CoA oxidase.
  
     0.475
Caci_5610
KEGG: fre:Franean1_3726 GDSL family lipase.
  
     0.475
Caci_3218
KEGG: sen:SACE_7282 secreted hydrolase.
  
     0.469
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.