STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_5223PFAM: Alpha-L-arabinofuranosidase B catalytic; Ricin B lectin; SMART: Ricin B lectin; KEGG: hypothetical protein. (627 aa)    
Predicted Functional Partners:
Caci_5224
PFAM: Carbohydrate binding family 6; SMART: cellulose binding type IV; KEGG: hypothetical protein.
   
 0.808
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
     
  0.800
Caci_4926
PFAM: Ricin B lectin; SMART: Ricin B lectin; KEGG: hypothetical protein.
 
     0.761
Caci_6866
PFAM: Ricin B lectin; SMART: Ricin B lectin; KEGG: hypothetical protein; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.733
Caci_4288
PFAM: cellulose-binding family II; SMART: cellulose-binding family II; KEGG: sco:SCO5786 secreted hydrolase.
 
     0.729
Caci_3629
PFAM: glycoside hydrolase family 28; KEGG: xac:XAC0661 endopolygalacturonase; Belongs to the glycosyl hydrolase 28 family.
  
  
  0.668
Caci_3630
PFAM: glycoside hydrolase family 28; KEGG: lxx:Lxx07750 endopolygalacturonase; Belongs to the glycosyl hydrolase 28 family.
  
  
  0.661
Caci_0462
Endo-1,4-beta-xylanase; KEGG: tfu:Tfu_1213 xylanase; PFAM: glycoside hydrolase family 11; SMART: cellulose-binding family II; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
   
 0.658
Caci_2607
KEGG: fra:Francci3_3458 hypothetical protein.
  
     0.649
Caci_2746
PFAM: Ricin B lectin; glycoside hydrolase family 30; Ig family protein; KEGG: hypothetical protein; K01201 glucosylceramidase.
  
     0.643
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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