STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_5292Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: kra:Krad_0483 anti-sigma-factor antagonist. (115 aa)    
Predicted Functional Partners:
Caci_6003
Protein serine phosphatase with GAF(s) sensor(s); PFAM: Stage II sporulation E family protein; ATP- binding region ATPase domain protein; GAF domain protein; SMART: protein phosphatase 2C domain protein; KEGG: sma:SAV_1902 hypothetical protein.
 
 
 0.895
Caci_7237
Protein serine phosphatase with GAF(s) sensor(s); PFAM: Stage II sporulation E family protein; GAF domain protein; ATP-binding region ATPase domain protein; SMART: protein phosphatase 2C domain protein; KEGG: tfu:Tfu_1752 protein phosphatase 2C-like.
 
 
 0.887
Caci_1919
Putative anti-sigma regulatory factor, serine/threonine protein kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: kra:Krad_4080 protein serine phosphatase with GAF(s) sensor(s).
 
 
 0.699
Caci_1920
KEGG: fra:Francci3_3754 putative serine/threonine kinase anti-sigma factor.
 
 
 0.692
Caci_6631
Putative signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: fre:Franean1_6225 putative PAS/PAC sensor protein.
 
   0.689
Caci_4531
Putative anti-sigma regulatory factor, serine/threonine protein kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: fre:Franean1_6225 putative PAS/PAC sensor protein.
 
 
 0.663
Caci_0743
Putative PAS/PAC sensor protein; KEGG: sma:SAV_3185 magnesium or manganese-dependent protein phosphatase; TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; PAS fold domain protein; GAF domain protein; PAS fold-4 domain protein; SMART: protein phosphatase 2C domain protein; GAF domain protein; PAS domain containing protein.
 
 
 0.633
Caci_2800
Putative signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: kra:Krad_1003 protein serine phosphatase with GAF(s) sensor(s).
 
   0.606
Caci_0109
Putative PAS/PAC sensor protein; KEGG: tfu:Tfu_0250 PAS containing protein phosphatase 2C-like; TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; PAS fold domain protein; GAF domain protein; PAS fold-4 domain protein; SMART: protein phosphatase 2C domain protein; GAF domain protein; PAS domain containing protein.
 
 
 0.601
Caci_5291
KEGG: stp:Strop_2947 hypothetical protein.
  
    0.599
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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