STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_5329PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sco:SCO6123 quinone binding protein. (127 aa)    
Predicted Functional Partners:
Caci_5328
KEGG: cmi:CMM_0192 hypothetical protein.
       0.542
Caci_5326
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: sma:SAV_6919 acyl-CoA dehydrogenase.
       0.524
Caci_5327
PFAM: peptidase M24; creatinase; KEGG: saq:Sare_2376 peptidase M24.
       0.524
Caci_5330
PFAM: extracellular solute-binding protein family 1; KEGG: sgr:SGR_3212 putative sugar ABC transporter substrate-binding protein.
       0.448
Caci_8306
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: stp:Strop_1661 helix-turn-helix domain- containing protein.
  
     0.419
Caci_7252
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sen:SACE_4410 hypothetical protein.
 
     0.415
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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