STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_5330PFAM: extracellular solute-binding protein family 1; KEGG: sgr:SGR_3212 putative sugar ABC transporter substrate-binding protein. (438 aa)    
Predicted Functional Partners:
Caci_5331
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO2796 cellobiose transport permease.
 
 0.980
Caci_5332
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sgr:SGR_3214 putative sugar ABC transporter permease protein.
 
 0.977
Caci_1719
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ttj:TTHA0975 sugar ABC transporter, ATP- binding protein.
  
 0.882
Caci_2154
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ace:Acel_0558 ABC transporter related; Belongs to the ABC transporter superfamily.
  
 0.882
Caci_3093
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: art:Arth_0750 ABC transporter related; Belongs to the ABC transporter superfamily.
  
 0.882
Caci_3206
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV_3962 ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 0.882
Caci_8165
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sma:SAV_3962 ABC transporter ATP-binding protein.
  
 0.882
Caci_5334
KEGG: fre:Franean1_5463 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI.
 
     0.683
Caci_5333
Beta-galactosidase; KEGG: sco:SCO7558 beta-glucosidase; TIGRFAM: beta-galactosidase; PFAM: glycoside hydrolase family 1.
 
  
 0.632
Caci_3587
PFAM: extracellular solute-binding protein family 1; KEGG: cms:CMS_0868 putative solute-binding transport protein.
  
   
 0.521
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.