STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_5355Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; NB-ARC domain protein; transcriptional regulator domain protein; SMART: Tetratricopeptide domain protein; KEGG: sma:SAV_3804 transcriptional regulator. (1138 aa)    
Predicted Functional Partners:
Caci_2532
PFAM: protein of unknown function DUF742; KEGG: fra:Francci3_4332 hypothetical protein.
  
     0.642
Caci_1062
PFAM: protein of unknown function DUF742; KEGG: sma:SAV_1631 hypothetical protein.
  
     0.618
Caci_4182
PFAM: protein of unknown function DUF742; KEGG: nfa:nfa23530 hypothetical protein.
  
     0.608
Caci_7580
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sgr:SGR_4534 putative phosphatase.
  
    0.599
Caci_6213
PFAM: protein of unknown function DUF574; KEGG: sen:SACE_6478 hypothetical protein.
  
     0.594
Caci_5052
PFAM: protein of unknown function DUF574; KEGG: sco:SCO0525 hypothetical protein.
  
     0.582
Caci_1502
KEGG: fra:Francci3_3446 XRE family transcriptional regulator.
  
    0.579
Caci_6214
SMART: helix-turn-helix domain protein; KEGG: fra:Francci3_3446 XRE family transcriptional regulator.
  
    0.573
Caci_5356
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: swi:Swit_1850 acyl-CoA dehydrogenase domain- containing protein.
       0.571
Caci_5357
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ank:AnaeK_1527 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
       0.571
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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