STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_5412PFAM: glycosyl transferase group 1; KEGG: tfu:Tfu_2026 putative glycosyl transferase. (366 aa)    
Predicted Functional Partners:
Caci_5414
KEGG: tfu:Tfu_2028 hypothetical protein.
 
  
 0.920
Caci_5413
PFAM: virulence factor MVIN family protein; KEGG: saq:Sare_1908 virulence factor MviN family protein.
     0.906
Caci_5415
KEGG: kra:Krad_3145 hypothetical protein.
 
     0.748
Caci_2433
KEGG: stp:Strop_2248 hypothetical protein.
  
     0.636
Caci_0759
PFAM: glycosyl transferase group 1; KEGG: sma:SAV_5354 glycosyl transferase.
  
     0.590
Caci_0243
PFAM: glycosyl transferase family 2; KEGG: kra:Krad_0170 glycosyl transferase family protein.
 
 
 0.575
Caci_3233
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position. Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.552
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.552
Caci_6400
PFAM: glycosyl transferase group 1; KEGG: kra:Krad_1062 glycosyl transferase group 1.
  
     0.480
Caci_6395
PFAM: glycosyl transferase group 1; KEGG: kra:Krad_1055 glycosyl transferase group 1.
  
     0.465
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.