STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_5419Hypothetical protein; KEGG: GE20840 gene product from transcript GE20840- RA. (81 aa)    
Predicted Functional Partners:
Caci_5420
PFAM: peptidase M28; FAD dependent oxidoreductase; peptidase M20; KEGG: stp:Strop_0633 FAD dependent oxidoreductase.
       0.773
Caci_5421
PFAM: major facilitator superfamily MFS_1; KEGG: stp:Strop_0632 major facilitator transporter.
       0.773
Caci_5423
PFAM: major intrinsic protein; KEGG: stp:Strop_0634 low molecular weight phosphotyrosine protein phosphatase; Belongs to the MIP/aquaporin (TC 1.A.8) family.
       0.630
Caci_5422
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: sgr:SGR_1747 ArsR family transcriptional regulator.
       0.623
Caci_5424
PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: sma:SAV_3756 low molecular weight protein tyrosine phosphatase.
       0.558
Caci_5418
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: stp:Strop_2949 regulatory protein, ArsR.
       0.539
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.