STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_5521PFAM: Endoribonuclease L-PSP; KEGG: sgr:SGR_1562 putative endoribonuclease. (134 aa)    
Predicted Functional Partners:
Caci_5522
PFAM: NADH:flavin oxidoreductase/NADH oxidase; monooxygenase FAD-binding; KEGG: sen:SACE_3134 salicylyl-CoA 5-hydroxylase.
 
  
 0.953
Caci_5520
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: sen:SACE_3132 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
     0.895
Caci_5524
PFAM: AMP-dependent synthetase and ligase; KEGG: sen:SACE_3131 AMP-dependent acetyl-coenzyme A synthetase and ligase.
 
  
 0.783
Caci_5523
Transcriptional regulator, PaaX family; PFAM: PaaX domain protein domain; PaaX domain protein; KEGG: sgr:SGR_1565 putative PaaX-like regulatory protein.
 
     0.574
Caci_6797
PFAM: Endoribonuclease L-PSP; KEGG: scl:sce6306 hypothetical protein.
  
     0.573
Caci_5519
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: fra:Francci3_4183 sigma-24; Belongs to the sigma-70 factor family. ECF subfamily.
       0.521
Caci_5525
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: sen:SACE_3133 putative acyl-CoA dehydrogenase.
  
 
   0.454
Caci_6321
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: saq:Sare_1049 acyl-CoA dehydrogenase domain- containing protein.
  
 
   0.431
Caci_1937
PFAM: cyclase family protein; KEGG: nfa:nfa12380 hypothetical protein.
 
     0.411
nnrD
Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow t [...]
  
  
 0.402
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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