STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_5633KEGG: sco:SCO3634 ABC transporter membrane-spanning protein. (566 aa)    
Predicted Functional Partners:
Caci_5634
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO3633 ABC transporter ATP-binding protein.
  
 0.958
Caci_6149
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV_4541 ABC transporter ATP-binding protein.
  
 0.822
Caci_5635
KEGG: sgr:SGR_6696 hypothetical protein.
 
     0.771
Caci_5571
PFAM: ABC-2 type transporter; KEGG: sma:SAV_4723 ABC transporter permease protein.
  
  
 0.683
Caci_3567
PFAM: regulatory protein TetR; KEGG: mmi:MMAR_2297 transcriptional regulator.
  
  
 0.606
Caci_5570
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mva:Mvan_3296 ABC transporter-related protein.
 
  
 0.472
Caci_5632
TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; KEGG: sen:SACE_3644 putative threonyl-tRNA synthetase.
       0.432
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.