STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_5653KEGG: sen:SACE_5300 hypothetical protein. (235 aa)    
Predicted Functional Partners:
Caci_4930
PFAM: Ricin B lectin; SMART: Ricin B lectin; Parallel beta-helix repeat; KEGG: cak:Caul_2405 hypothetical protein.
  
     0.630
Caci_3475
PFAM: Calcium-binding EF-hand-containing protein; SMART: Calcium-binding EF-hand-containing protein; KEGG: sco:SCO0141 calcium-binding protein.
  
 
   0.605
uvrB
Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]
  
    0.571
Caci_5654
Beta-N-acetylhexosaminidase; KEGG: sma:SAV_3393 beta-N-acetylglucosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; Ricin B lectin; coagulation factor 5/8 type domain protein; SMART: Ricin B lectin.
       0.468
Caci_2081
TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: sma:SAV_21 rhs protein.
  
     0.425
Caci_8624
TIGRFAM: YD repeat protein; KEGG: sgr:SGR_3450 rhs/YD repeat-containing protein.
  
     0.425
Caci_1195
KEGG: stp:Strop_0896 hypothetical protein.
  
     0.424
Caci_8640
TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: sgr:SGR_3450 rhs/YD repeat-containing protein.
  
     0.416
Caci_4913
PFAM: glycoside hydrolase family 12; KEGG: sco:SCO5691 hypothetical protein.
  
     0.415
Caci_8415
PFAM: zinc finger SWIM domain protein; KEGG: sma:SAV_457 hypothetical protein.
  
     0.411
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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