STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_5687PFAM: response regulator receiver; ANTAR domain protein; SMART: response regulator receiver; KEGG: sco:SCO2013 two-component system response regulator. (210 aa)    
Predicted Functional Partners:
Caci_7712
PFAM: histidine kinase dimerisation/phosphoacceptor; ATP-binding region ATPase domain protein; PAS fold-4 domain protein; KEGG: sma:SAV_3017 two-component system sensor kinase.
 
   
 0.904
Caci_5672
PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; KEGG: sco:SCO1998 30S ribosomal protein S1.
 
    0.810
Caci_2648
PFAM: Extracellular ligand-binding receptor; KEGG: fra:Francci3_0341 extracellular ligand- binding receptor.
  
 
 0.700
Caci_3317
PFAM: Extracellular ligand-binding receptor; KEGG: sgr:SGR_1527 putative branched-chain amino acid ABC transporter substrate-binding protein.
  
 
 0.700
Caci_5186
PFAM: Extracellular ligand-binding receptor; KEGG: sgr:SGR_1527 putative branched-chain amino acid ABC transporter substrate-binding protein.
  
 
 0.700
Caci_5686
PFAM: Extracellular ligand-binding receptor; KEGG: fra:Francci3_0341 extracellular ligand- binding receptor.
  
 
 0.700
Caci_7912
PFAM: Extracellular ligand-binding receptor; KEGG: tfu:Tfu_0074 ABC branched-chain amino acid transporter substrate-binding protein.
  
 
 0.700
Caci_2241
PFAM: Extracellular ligand-binding receptor; KEGG: scl:sce9122 putative binding-protein- dependent transport protein.
  
 
 0.696
Caci_3347
Amino acid/amide ABC transporter substrate- binding protein, HAAT family; KEGG: fra:Francci3_0852 hypothetical protein.
  
 
 0.680
Caci_3608
KEGG: sma:SAV_4803 hypothetical protein.
  
 
 0.680
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.