STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_5803PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: sma:SAV_3465 integral membrane protein. (429 aa)    
Predicted Functional Partners:
Caci_4478
TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: sco:SCO6535 nitrate reductase alpha chain NarG; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.983
Caci_4477
TIGRFAM: nitrate reductase, beta subunit; KEGG: sco:SCO6534 nitrate reductase beta chain NarH.
 
 
 0.961
Caci_4476
TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase delta subunit; KEGG: sco:SCO6533 nitrate reductase delta chain NarJ.
 
  
 0.891
Caci_6173
PFAM: major facilitator superfamily MFS_1; KEGG: fra:Francci3_1315 major facilitator transporter.
  
  
 0.649
Caci_2286
PFAM: Acetoacetate decarboxylase; KEGG: sma:SAV_6441 hypothetical protein.
  
     0.645
Caci_4967
Hypothetical protein; KEGG: sus:Acid_3219 glycosyl hydrolase.
  
     0.643
Caci_2321
TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sgr:SGR_5984 putative uroporphyrin-III methyltransferase.
  
    0.630
Caci_5806
KEGG: sma:SAV_144 hypothetical protein.
  
   
 0.625
Caci_8646
PFAM: NHL repeat containing protein; KEGG: syd:Syncc9605_0903 NHL repeat-containing protein.
  
     0.620
Caci_2289
PFAM: amidohydrolase 2; KEGG: sma:SAV_6444 amidohydrolase.
  
     0.605
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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