STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_5833Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; Tetratricopeptide TPR_4; TPR repeat-containing protein; NB- ARC domain protein; transcriptional regulator domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sen:SACE_0488 SARP family transcriptional regulator. (937 aa)    
Predicted Functional Partners:
Caci_4657
Transcriptional regulator, winged helix family; PFAM: transcriptional regulator domain protein; transcriptional activator domain; SMART: AAA ATPase; KEGG: fra:Francci3_2022 transcriptional regulator.
  
  
0.707
Caci_7580
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sgr:SGR_4534 putative phosphatase.
  
    0.686
Caci_2100
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: sgr:SGR_4488 putative transcriptional regulator.
   
    0.655
Caci_5831
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: saq:Sare_4186 ABC transporter related.
  
    0.642
Caci_5832
TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: saq:Sare_4184 hypothetical protein.
       0.632
Caci_5830
Hypothetical protein.
       0.631
Caci_3346
PFAM: CMP/dCMP deaminase zinc-binding; KEGG: sma:SAV_590 cytidine/deoxycytidine deaminase.
   
  
 0.628
Caci_5932
TIGRFAM: transcriptional regulator, ArgP family; PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: sma:SAV_1121 chromosome replication initiation inhibitor protein.
   
    0.608
moaA
Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
   
  
 0.593
Caci_5829
KEGG: saq:Sare_4185 hypothetical protein.
       0.566
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.