STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_5838PFAM: Acetyl xylan esterase; KEGG: sgr:SGR_835 putative deacetylase. (330 aa)    
Predicted Functional Partners:
Caci_3816
PFAM: Acetyl xylan esterase; KEGG: sma:SAV_1457 acetyl xylan esterase.
  
  
  0.954
Caci_4684
PFAM: Acetyl xylan esterase; KEGG: rrs:RoseRS_0796 acetyl xylan esterase.
  
  
 
0.920
Caci_5839
PFAM: Ribose/galactose isomerase; KEGG: sco:SCO1224 sugar-phosphate isomerase.
       0.636
Caci_5840
KEGG: mab:MAB_2476 hypothetical protein.
       0.574
Caci_5841
KEGG: fal:FRAAL5024 hypothetical protein.
       0.574
Caci_5842
KEGG: mab:MAB_0550 hypothetical protein.
       0.524
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.