STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_5917PFAM: BFD domain protein [2Fe-2S]-binding domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose- inhibited division protein A; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; KEGG: sco:SCO6291 secreted oxidase. (629 aa)    
Predicted Functional Partners:
Caci_5916
PFAM: dihydrodipicolinate synthetase; KEGG: sma:SAV_1731 dihydrodipicolinate synthase; Belongs to the DapA family.
  
  0.995
Caci_5919
PFAM: FAD dependent oxidoreductase; KEGG: sma:SAV_1734 oxidoreductase.
 
  0.995
Caci_5918
KEGG: sma:SAV_1733 hypothetical protein.
 
     0.956
Caci_5915
PFAM: proline racemase; KEGG: sma:SAV_1730 proline racemase; Belongs to the proline racemase family.
 
     0.952
Caci_2715
PFAM: FAD dependent oxidoreductase; KEGG: sen:SACE_2961 fructosyl-amino acid oxidase, putative.
 
 
  0.943
Caci_6219
TIGRFAM: FAD dependent oxidoreductase TIGR03364; PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: rha:RHA1_ro03606 oxidoreductase.
 
 
  0.932
Caci_5914
Transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: sgr:SGR_1622 GntR family transcriptional regulator.
 
     0.765
Caci_5920
Putative transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: sen:SACE_4908 cyclic nucleotide-binding domain-containing protein.
  
  
 0.571
Caci_7805
PFAM: Aldehyde Dehydrogenase; KEGG: xau:Xaut_3374 aldehyde dehydrogenase.
 
  
 0.562
Caci_4478
TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: sco:SCO6535 nitrate reductase alpha chain NarG; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
  
 0.540
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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