STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_5945Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cau:Caur_3204 LysR substrate-binding; Belongs to the LysR transcriptional regulatory family. (307 aa)    
Predicted Functional Partners:
Caci_1447
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sco:SCO3773 LysR family transcriptional regulator.
  
     0.772
Caci_7477
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: nfa:nfa29660 putative transcriptional regulator.
  
     0.769
Caci_5031
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: fre:Franean1_3529 LysR family transcriptional regulator.
  
     0.768
Caci_0540
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sen:SACE_1630 putative transcriptional regulator.
  
     0.762
Caci_4100
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sgr:SGR_1442 LysR family transcriptional regulator.
  
     0.757
Caci_6221
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: fal:FRAAL3649 LysR family transcriptional regulator.
  
     0.757
Caci_1233
PFAM: regulatory protein LysR; KEGG: cmi:CMM_1522 LysR family transcriptional regulator.
  
     0.751
Caci_7146
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sco:SCO5914 transcriptional regulator.
  
     0.743
Caci_1770
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sco:SCO2734 LysR family transcriptional regulator.
  
     0.740
Caci_6411
PFAM: regulatory protein LysR; KEGG: sil:SPO2961 LysR family transcriptional regulator.
  
     0.721
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.