STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_5977PFAM: regulatory protein TetR; KEGG: nfa:nfa1170 putative transcriptional regulator. (271 aa)    
Predicted Functional Partners:
Caci_0687
Hypothetical protein; KEGG: mpo:Mpop_3207 metal dependent phosphohydrolase.
  
     0.753
Caci_5976
KEGG: sma:SAV_2170 cholesterol esterase.
 
     0.648
Caci_5975
KEGG: sma:SAV_2171 hypothetical protein.
 
     0.582
Caci_1398
PFAM: regulatory protein TetR; KEGG: sco:SCO5209 TetR family transcriptional regulator.
  
     0.562
Caci_1992
KEGG: sen:SACE_1800 hypothetical protein.
  
     0.550
Caci_2790
KEGG: gvi:glr3809 hypothetical protein.
  
     0.542
Caci_5979
KEGG: sma:SAV_2169 hypothetical protein.
       0.513
Caci_5978
KEGG: sgr:SGR_1044 hypothetical protein.
       0.510
Caci_5085
KEGG: fra:Francci3_4460 polyhydroxybutyrate depolymerase.
  
    0.501
Caci_3182
N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; Peptidoglycan-binding domain 1 protein; SMART: Animal peptidoglycan recognition protein PGRP; N-acetylmuramoyl-L-alanine amidase family 2; KEGG: sen:SACE_3731 hypothetical protein.
  
     0.445
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.