STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_5980PFAM: aminoglycoside phosphotransferase; KEGG: stp:Strop_1563 aminoglycoside phosphotransferase. (353 aa)    
Predicted Functional Partners:
Caci_1151
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: rha:RHA1_ro02696 acyl-CoA dehydrogenase.
   0.979
Caci_7441
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: msm:MSMEG_4076 butyryl-CoA dehydrogenase.
 
   0.910
Caci_2226
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: sen:SACE_3243 acyl-CoA dehydrogenase.
 
   0.909
Caci_5981
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sen:SACE_2746 3-ketoacyl-(acyl-carrier- protein) reductase.
   0.750
Caci_7442
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: msm:MSMEG_4076 butyryl-CoA dehydrogenase.
 
   0.658
Caci_6282
KEGG: sgr:SGR_5290 putative oxidoreductase.
 
    0.645
Caci_5243
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sgr:SGR_502 putative oxidoreductase.
 
   0.635
Caci_3222
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: rha:RHA1_ro02297 acyl CoA dehydrogenase.
 
   0.627
Caci_1158
PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: nfa:nfa52670 putative dehydrogenase.
 
    0.625
Caci_7978
KEGG: rha:RHA1_ro05183 hypothetical protein.
  
  
 0.612
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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