STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_5988PFAM: class II aldolase/adducin family protein; KEGG: mab:MAB_2912c aldolase. (271 aa)    
Predicted Functional Partners:
Caci_7769
Citrate (pro-3S)-lyase; PFAM: HpcH/HpaI aldolase; KEGG: sgr:SGR_1172 putative lyase; Belongs to the HpcH/HpaI aldolase family.
   
    0.803
Caci_6575
KEGG: sma:SAV_1400 hypothetical protein.
    
  0.740
Caci_5363
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
  
 0.641
Caci_5987
PFAM: regulatory protein TetR; KEGG: mab:MAB_2913 TetR family regulatory protein.
       0.550
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
  
 0.537
Caci_4715
TIGRFAM: L-ribulokinase; PFAM: carbohydrate kinase FGGY; KEGG: nca:Noca_0380 ribulokinase; Belongs to the ribulokinase family.
  
  
 0.517
mtnA
Translation initiation factor, aIF-2BI family; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).
  
  
 0.499
xylB
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: stp:Strop_3591 xylulokinase.
  
  
 0.418
xylB-2
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: stp:Strop_3591 xylulokinase.
  
  
 0.418
Caci_6710
PFAM: carbohydrate kinase FGGY; KEGG: sco:SCO0814 rhamnose kinase.
  
  
 0.418
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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