STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_6086PFAM: short-chain dehydrogenase/reductase SDR; NAD- dependent epimerase/dehydratase; KEGG: kra:Krad_4034 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (231 aa)    
Predicted Functional Partners:
Caci_6085
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: kra:Krad_4035 XRE family transcriptional regulator.
 
     0.637
Caci_2114
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: fal:FRAAL4427 putative short-chain oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
   0.594
Caci_7064
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: saq:Sare_2906 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.593
Caci_5146
PFAM: short-chain dehydrogenase/reductase SDR; Male sterility domain; KR domain protein; KEGG: mes:Meso_3901 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
   0.579
Caci_7823
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ter:Tery_2914 short chain dehydrogenase.
  
     0.524
Caci_2182
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: saq:Sare_2205 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.474
Caci_2587
TIGRFAM: PfaD family protein; malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: scl:sce4138 putative acyltransferase/oxidoreductase.
  
 
 0.451
Caci_8863
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sco:SCO0229 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
   0.447
Caci_5011
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: tfu:Tfu_1784 putative oxidoreductase.
  
     0.446
Caci_4560
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gdi:GDI2727 hypothetical protein.
  
     0.438
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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