STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_6116PFAM: protein of unknown function DUF6 transmembrane; KEGG: btk:BT9727_4157 DMT family permease. (330 aa)    
Predicted Functional Partners:
Caci_6117
Transcriptional regulator, AraC family; PFAM: AraC protein arabinose-binding/dimerisation; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bmj:BMULJ_04883 AraC family transcriptional regulator.
 
     0.769
Caci_6118
KEGG: dac:Daci_4841 TPR repeat-containing protein.
  
   0.473
Caci_5971
PFAM: Cupin 2 conserved barrel domain protein; KEGG: sco:SCO1737 hypothetical protein.
 
  
 0.435
Caci_4101
PFAM: protein of unknown function DUF6 transmembrane; KEGG: tth:TTC0899 hypothetical protein.
  
     0.430
Caci_6192
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mxa:MXAN_7068 hypothetical protein.
  
     0.421
Caci_8864
PFAM: regulatory protein TetR; KEGG: sco:SCO0230 TetR family transcriptional regulator.
  
     0.410
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.