STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_6124KEGG: mlo:mll3824 hypothetical protein. (143 aa)    
Predicted Functional Partners:
Caci_8475
TIGRFAM: secretion protein snm4; PFAM: protein of unknown function DUF571; KEGG: sgr:SGR_6351 hypothetical protein.
  
     0.648
Caci_8521
TIGRFAM: secretion protein snm4; PFAM: protein of unknown function DUF571; KEGG: sen:SACE_5517 integral membrane protein.
  
     0.644
Caci_6123
PFAM: regulatory protein TetR; KEGG: mab:MAB_0647 transcriptional regulator TetR.
 
     0.632
Caci_3150
PFAM: protein of unknown function DUF690; KEGG: saq:Sare_0941 hypothetical protein.
  
     0.571
Caci_3148
TIGRFAM: secretion protein snm4; PFAM: protein of unknown function DUF571; KEGG: saq:Sare_0940 hypothetical protein.
  
     0.548
Caci_8522
PFAM: protein of unknown function DUF690; KEGG: stp:Strop_1440 hypothetical protein.
  
     0.535
Caci_6403
PFAM: Ig family protein; peptidase M4 thermolysin; Peptidase M4 thermolysin; KEGG: sco:SCO1226 bifunctional protein.
  
  
 0.533
Caci_1905
Putative transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: sco:SCO3600 hypothetical protein.
  
    0.507
Caci_3850
PFAM: Antibiotic biosynthesis monooxygenase; globin; KEGG: fal:FRAAL2473 hypothetical protein.
  
     0.493
Caci_1450
PFAM: Antibiotic biosynthesis monooxygenase; globin; KEGG: sma:SAV_3316 hypothetical protein.
  
     0.489
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.