STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_6156KEGG: fra:Francci3_2235 hypothetical protein. (457 aa)    
Predicted Functional Partners:
Caci_6155
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fal:FRAAL3681 putative ABC transporter ATP- binding protein.
 
 
 0.959
Caci_4335
PFAM: phosphoesterase; KEGG: sus:Acid_4558 YVTN beta-propeller repeat- containing protein.
 
    0.804
Caci_6277
KEGG: sma:SAV_37 hypothetical protein.
  
     0.739
Caci_4967
Hypothetical protein; KEGG: sus:Acid_3219 glycosyl hydrolase.
  
     0.708
Caci_5379
KEGG: bid:Bind_0259 putative 3-carboxymuconate cyclase.
  
     0.584
Caci_6145
PFAM: FMN-binding domain protein; KEGG: sma:SAV_6771 hypothetical protein.
  
     0.563
Caci_4959
PFAM: Ricin B lectin; SMART: Ricin B lectin; KEGG: cac:CA_P0117 beta-xylosidase.
  
     0.545
Caci_8783
KEGG: hau:Haur_2910 peptidase M48 Ste24p.
  
     0.528
Caci_2060
PFAM: copper resistance D domain protein; KEGG: cak:Caul_2346 copper resistance D domain- containing protein.
  
     0.525
Caci_4661
KEGG: fre:Franean1_0258 hypothetical protein.
  
     0.504
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.