STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_6188PFAM: GCN5-related N-acetyltransferase; KEGG: sen:SACE_3675 GCN5-related N- acetyltransferase. (188 aa)    
Predicted Functional Partners:
Caci_1711
PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: sen:SACE_5312 TetR family transcriptional regulator.
  
     0.564
Caci_6189
Hypothetical protein.
       0.547
Caci_3289
KEGG: hch:HCH_03033 hypothetical protein.
  
     0.513
Caci_5961
KEGG: sgr:SGR_477 putative cholesterol oxidase.
  
     0.432
Caci_4290
PFAM: condensation domain protein; KEGG: sgr:SGR_5180 hypothetical protein.
  
     0.424
Caci_6190
PFAM: cytochrome P450; KEGG: stp:Strop_1867 cytochrome P450.
       0.423
Caci_7202
PFAM: type 3a cellulose-binding domain protein; KEGG: sco:SCO0535 hydrolase (secreted protein).
  
     0.419
Caci_7620
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: fre:Franean1_3648 pyridoxamine 5'-phosphate oxidase-related FMN-binding.
 
     0.419
Caci_1563
KEGG: sen:SACE_1148 hypothetical protein.
  
     0.403
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.