STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_6190PFAM: cytochrome P450; KEGG: stp:Strop_1867 cytochrome P450. (406 aa)    
Predicted Functional Partners:
Caci_3458
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: mxa:MXAN_4601 non-ribosomal peptide synthase.
  
 0.963
Caci_6287
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; phosphopantetheine-binding; condensation domain protein; KEGG: saq:Sare_2961 amino acid adenylation domain- containing protein.
  
 
 0.934
Caci_3439
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; phosphopantetheine-binding; KEGG: ter:Tery_2968 amino acid adenylation domain- containing protein.
  
 0.897
Caci_2592
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Beta- ketoacyl synthase; phosphopantetheine-binding; Non- ribosomal peptide synthetase; condensation domain protein; KEGG: scl:sce4135 hybrid polyketide synthase/nonribosomal peptide synthetase.
  
 0.865
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
 0.739
Caci_3431
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: npu:Npun_CR072 amino acid adenylation domain- containing protein.
  
 0.728
Caci_3433
PFAM: condensation domain protein; phosphopantetheine-binding; KEGG: scl:sce8257 non-ribosomal peptide synthetase.
  
 0.728
Caci_6191
KEGG: sma:SAV_6516 hypothetical protein.
       0.697
Caci_4894
PFAM: ferredoxin; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: sco:SCO6678 iron-sulfur oxidoreductase beta subunit.
 
 0.634
Caci_6189
Hypothetical protein.
       0.581
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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