STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_6213PFAM: protein of unknown function DUF574; KEGG: sen:SACE_6478 hypothetical protein. (268 aa)    
Predicted Functional Partners:
Caci_6214
SMART: helix-turn-helix domain protein; KEGG: fra:Francci3_3446 XRE family transcriptional regulator.
     0.897
Caci_1502
KEGG: fra:Francci3_3446 XRE family transcriptional regulator.
     0.782
Caci_5053
SMART: helix-turn-helix domain protein; KEGG: fre:Franean1_1293 helix-turn-helix domain- containing protein.
     0.782
Caci_8469
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: fre:Franean1_6648 helix-turn-helix domain- containing protein.
  
     0.772
Caci_0264
SMART: helix-turn-helix domain protein; KEGG: fal:FRAAL0518 putative DNA-binding protein.
  
     0.770
Caci_3240
Transcriptional regulator, XRE family; KEGG: sgr:SGR_4257 putative DNA-binding protein.
  
     0.770
Caci_1062
PFAM: protein of unknown function DUF742; KEGG: sma:SAV_1631 hypothetical protein.
  
     0.769
Caci_1504
PFAM: protein of unknown function DUF397; KEGG: sco:SCO3424 regulator.
  
     0.766
Caci_0266
PFAM: protein of unknown function DUF397; KEGG: nfa:nfa56120 hypothetical protein.
  
     0.765
Caci_0265
PFAM: protein of unknown function DUF397; KEGG: sen:SACE_6608 regulator.
  
     0.761
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.