STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_6256PFAM: membrane protein of unknown function; KEGG: pca:Pcar_2963 hypothetical protein. (125 aa)    
Predicted Functional Partners:
Caci_6257
PFAM: protein of unknown function UPF0118; KEGG: sgr:SGR_3788 putative integral membrane protein.
  
    0.766
Caci_6255
PFAM: ribonuclease BN; KEGG: rha:RHA1_ro04300 hypothetical protein.
       0.651
Caci_7475
KEGG: sma:SAV_696 hypothetical protein.
 
  
 0.486
Caci_2782
KEGG: sma:SAV_696 hypothetical protein.
 
  
 0.469
Caci_4275
KEGG: sma:SAV_696 hypothetical protein.
 
  
 0.466
Caci_6254
KEGG: sco:SCO6327 integral membrane protein.
       0.463
Caci_0395
KEGG: sma:SAV_696 hypothetical protein.
 
  
 0.442
Caci_8820
PFAM: membrane protein of unknown function; KEGG: sco:SCO3922 hypothetical protein.
  
     0.420
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.