STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_6291KEGG: rxy:Rxyl_2597 hypothetical protein. (195 aa)    
Predicted Functional Partners:
Caci_6292
Hypothetical protein.
   
   0.990
Caci_6294
PFAM: Transketolase domain protein; KEGG: pth:PTH_2750 transketolase, N-terminal subunit.
       0.658
Caci_6295
PFAM: Transketolase central region; Transketolase domain protein; KEGG: dau:Daud_2077 transketolase, central region.
       0.634
Caci_6296
TIGRFAM: lysine biosynthesis protein LysW; KEGG: cau:Caur_0333 lysine biosynthesis protein LysW.
       0.627
Caci_6290
KEGG: rxy:Rxyl_0774 hypothetical protein.
       0.602
Caci_6293
Glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rle:pRL90152 putative pleiotropic regulator; Belongs to the DegT/DnrJ/EryC1 family.
       0.598
Caci_6297
KEGG: mjl:Mjls_2740 hypothetical protein.
       0.594
Caci_6298
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: sen:SACE_0496 3-oxoacyl-[acyl-carrier protein] reductase.
       0.548
Caci_6299
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: sen:SACE_0496 3-oxoacyl-[acyl-carrier protein] reductase.
       0.548
Caci_6289
TIGRFAM: lysine biosynthesis enzyme LysX; alpha-L- glutamate ligase, RimK family; PFAM: RimK domain protein ATP-grasp; protein of unknown function DUF201; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; KEGG: dge:Dgeo_1151 lysine biosynthesis enzyme LysX; Belongs to the RimK family.
       0.429
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.