STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_6302Hypothetical protein; KEGG: bpd:BURPS668_2002 argininosuccinate lyase. (401 aa)    
Predicted Functional Partners:
accA
acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
  
 
 0.982
Caci_6809
PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: nca:Noca_1990 (acyl-carrier-protein) S- malonyltransferase.
  
 
 0.942
Caci_3728
KEGG: cmi:CMM_0120 putative UreA amidolyase; TIGRFAM: urea carboxylase; urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; Carbamoyl- phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; Allophanate hydrolase subunit 1; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthetase large chain domain protein; SMART: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1.
  
 
 0.890
Caci_0819
TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; biotin protein ligase domain protein; KEGG: sco:SCO4927 ligase.
  
 0.810
Caci_1092
Biotin/lipoyl attachment domain-containing protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
  
 
 0.798
Caci_3473
PFAM: Beta-ketoacyl synthase; Acyl transferase; KR domain protein; short-chain dehydrogenase/reductase SDR; 2- nitropropane dioxygenase NPD; KEGG: sen:SACE_2342 modular polyketide synthase.
  
 
 0.693
Caci_3759
PFAM: protein of unknown function DUF201; ATP- dependent carboxylate-amine ligase domain protein ATP- grasp; phosphoribosylglycinamide synthetase; KEGG: fal:FRAAL2536 hypothetical protein.
  
     0.675
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
  
  
 0.553
Caci_2587
TIGRFAM: PfaD family protein; malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: scl:sce4138 putative acyltransferase/oxidoreductase.
  
  
 0.541
Caci_6301
PFAM: fatty acid desaturase; KEGG: bte:BTH_I1365 fatty acid desaturase family protein, putative.
     
 0.518
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.