STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_6469PFAM: alpha/beta hydrolase fold protein; KEGG: sma:SAV_4779 haloalkane dehalogenase. (287 aa)    
Predicted Functional Partners:
Caci_5895
PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: sma:SAV_5871 dehydrogenase.
   
  0.907
Caci_8750
PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: sgr:SGR_3049 putative alcohol dehydrogenase.
   
  0.907
Caci_1323
PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: nfa:nfa35090 putative dehydrogenase.
    
  0.903
Caci_6470
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: sma:SAV_4780 hypothetical protein.
       0.648
Caci_1114
PFAM: alpha/beta hydrolase fold protein; KEGG: hau:Haur_4401 alpha/beta hydrolase fold protein.
  
     0.601
Caci_2398
PFAM: alpha/beta hydrolase fold protein; KEGG: sgr:SGR_6936 putative hydrolase.
  
     0.573
Caci_7870
PFAM: alpha/beta hydrolase fold protein; KEGG: tte:TTE0552 alpha/beta superfamily hydrolase/acyltransferase.
  
     0.552
Caci_8158
PFAM: alpha/beta hydrolase fold protein; KEGG: sgr:SGR_6815 putative hydrolase.
  
     0.537
Caci_7676
PFAM: alpha/beta hydrolase fold protein; KEGG: sco:SCO0939 hydrolase.
  
     0.487
Caci_2789
PFAM: alpha/beta hydrolase fold protein; KEGG: cmi:CMM_0189 putative hydrolase.
  
     0.472
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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