STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_6489PFAM: Acyl-CoA dehydrogenase type 2 domain; KEGG: sco:SCO5080 hydrolase. (387 aa)    
Predicted Functional Partners:
Caci_6490
PFAM: Antibiotic biosynthesis monooxygenase; KEGG: sco:SCO5081 hypothetical protein.
    
  0.976
Caci_6495
PFAM: flavin reductase domain protein FMN-binding; KEGG: sth:STH1890 putative oxidoreductase.
 
 
 0.930
Caci_6496
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: fra:Francci3_4105 zinc-binding alcohol dehydrogenase.
  
  0.905
Caci_5261
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: sgr:SGR_993 putative fatty acid oxidation complex alpha-subunit.
  
 0.707
Caci_6776
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: sma:SAV_2234 fatty acid oxidation complex alpha-subunit.
  
 0.707
Caci_0063
KEGG: nfa:nfa4530 lipid-transfer protein.
 
 
 0.633
Caci_0062
PFAM: MaoC domain protein dehydratase; KEGG: rha:RHA1_ro05828 hypothetical protein.
 
 0.614
Caci_5359
PFAM: MaoC domain protein dehydratase; KEGG: swi:Swit_1853 hypothetical protein.
 
 0.610
Caci_5094
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: sma:SAV_1595 3-ketosteroid-delta-1- dehydrogenase.
  
 
 0.589
Caci_5896
3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase; PFAM: MaoC domain protein dehydratase; KEGG: sgr:SGR_5207 putative MaoC-like dehydratase.
 
  0.587
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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