STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_6500PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; phosphoribosylglycinamide synthetase; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: sgr:SGR_2621 putative acyl-CoA carboxylase alpha subunit. (589 aa)    
Predicted Functional Partners:
Caci_0821
PFAM: carboxyl transferase; KEGG: sgr:SGR_2616 putative acyl-CoA carboxylase beta subunit.
 
 0.995
Caci_6813
Propionyl-CoA carboxylase; PFAM: carboxyl transferase; KEGG: nca:Noca_1986 propionyl-CoA carboxylase.
 
 0.995
accA
acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
 
 0.989
Caci_1092
Biotin/lipoyl attachment domain-containing protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
 
 0.987
Caci_6809
PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: nca:Noca_1990 (acyl-carrier-protein) S- malonyltransferase.
 
 0.987
Caci_6502
PFAM: carboxyl transferase; KEGG: sco:SCO6284 decarboxylase.
 
 0.978
Caci_3541
PFAM: carboxyl transferase; KEGG: sgr:SGR_3281 putative methylmalonyl-CoA decarboxylase alpha subunit.
 
 0.958
Caci_7733
PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: saq:Sare_4093 biotin/lipoyl attachment domain- containing protein.
   
 0.946
Caci_7671
PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: sma:SAV_4877 2-oxoglutarate ferredoxin oxidoreductase, alpha subunit.
   
 0.928
Caci_1258
TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sma:SAV_2857 hypothetical protein.
  
 
 0.921
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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