STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_6564PFAM: ABC-2 type transporter; KEGG: ade:Adeh_3115 ABC transporter, inner membrane subunit. (375 aa)    
Predicted Functional Partners:
Caci_6563
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pzu:PHZ_p0154 ABC transport system, ATPase component.
  
 0.995
Caci_6562
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_0859 ABC transporter related.
  
 0.994
Caci_5570
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mva:Mvan_3296 ABC transporter-related protein.
  
 0.974
Caci_6992
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ote:Oter_0056 ABC transporter related.
  
 0.931
Caci_0975
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: saq:Sare_4170 ABC transporter related.
 
  
 0.920
Caci_2251
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sgr:SGR_5593 putative ABC transporter ATP- binding protein.
 
  
 0.920
Caci_7343
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: stp:Strop_3622 ABC transporter related.
 
  
 0.920
Caci_0286
KEGG: sco:SCO4405 ABC transport system ATP-binding protein; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.919
Caci_1383
KEGG: saq:Sare_4550 daunorubicin resistance ABC transporter ATPase subunit; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.918
Caci_2064
KEGG: fal:FRAAL2549 antibiotic resistance ATP- binding protein; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.918
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.