STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_6612PFAM: Transglycosylase-associated protein; KEGG: sma:SAV_1006 hypothetical protein. (89 aa)    
Predicted Functional Partners:
Caci_6613
Glutamate--cysteine ligase GCS2; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.
  
    0.602
egtD
Methyltransferase; Catalyzes the SAM-dependent triple methylation of the alpha- amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine; Belongs to the methyltransferase superfamily. EgtD family.
   
    0.594
Caci_7854
PFAM: protein of unknown function DUF1508; KEGG: tde:TDE0826 hypothetical protein.
  
  
 0.530
Caci_7351
PFAM: OsmC family protein; KEGG: nca:Noca_1377 OsmC family protein.
 
    0.525
Caci_6611
PFAM: protein of unknown function DUF72; KEGG: sco:SCO6458 hypothetical protein.
       0.501
Caci_1969
KEGG: sgr:SGR_6091 putative integral membrane protein.
  
     0.438
Caci_7669
KEGG: hma:rrnAC2817 hypothetical protein.
  
  
 0.421
Caci_1019
PFAM: protein of unknown function DUF909; KEGG: sen:SACE_6783 hypothetical protein; Belongs to the WXG100 family.
  
     0.419
Caci_3481
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
    0.415
Caci_2686
PFAM: CsbD family protein; KEGG: scl:sce0440 hypothetical protein; Belongs to the UPF0337 (CsbD) family.
  
  
 0.410
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.