Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Caci_6620 | Caci_6621 | Caci_6620 | Caci_6621 | Lysozyme; KEGG: sgr:SGR_4818 putative lysozyme M1 precursor; PFAM: glycoside hydrolase family 25; SMART: glycoside hydrolase family 25. | SMART: PBS lyase HEAT domain protein repeat- containing protein; KEGG: ana:all3892 hypothetical protein. | 0.442 |
Caci_6621 | Caci_6620 | Caci_6621 | Caci_6620 | SMART: PBS lyase HEAT domain protein repeat- containing protein; KEGG: ana:all3892 hypothetical protein. | Lysozyme; KEGG: sgr:SGR_4818 putative lysozyme M1 precursor; PFAM: glycoside hydrolase family 25; SMART: glycoside hydrolase family 25. | 0.442 |
Caci_6621 | Caci_6622 | Caci_6621 | Caci_6622 | SMART: PBS lyase HEAT domain protein repeat- containing protein; KEGG: ana:all3892 hypothetical protein. | PFAM: Ricin B lectin; SMART: Ricin B lectin; KEGG: sco:SCO5932 arabinofuranosidase. | 0.444 |
Caci_6621 | efp | Caci_6621 | Caci_2393 | SMART: PBS lyase HEAT domain protein repeat- containing protein; KEGG: ana:all3892 hypothetical protein. | Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | 0.808 |
Caci_6621 | guaA | Caci_6621 | Caci_1506 | SMART: PBS lyase HEAT domain protein repeat- containing protein; KEGG: ana:all3892 hypothetical protein. | GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP. | 0.412 |
Caci_6622 | Caci_6621 | Caci_6622 | Caci_6621 | PFAM: Ricin B lectin; SMART: Ricin B lectin; KEGG: sco:SCO5932 arabinofuranosidase. | SMART: PBS lyase HEAT domain protein repeat- containing protein; KEGG: ana:all3892 hypothetical protein. | 0.444 |
efp | Caci_6621 | Caci_2393 | Caci_6621 | Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | SMART: PBS lyase HEAT domain protein repeat- containing protein; KEGG: ana:all3892 hypothetical protein. | 0.808 |
efp | guaA | Caci_2393 | Caci_1506 | Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP. | 0.838 |
guaA | Caci_6621 | Caci_1506 | Caci_6621 | GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP. | SMART: PBS lyase HEAT domain protein repeat- containing protein; KEGG: ana:all3892 hypothetical protein. | 0.412 |
guaA | efp | Caci_1506 | Caci_2393 | GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP. | Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | 0.838 |