STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_6666TIGRFAM: squalene-associated FAD-dependent desaturase; PFAM: amine oxidase; KEGG: sen:SACE_4329 squalene/phytoene dehydrogenase. (440 aa)    
Predicted Functional Partners:
Caci_6667
TIGRFAM: squalene synthase HpnD; PFAM: Squalene/phytoene synthase; KEGG: ace:Acel_1694 squalene/phytoene synthase.
  
 0.996
Caci_6668
TIGRFAM: squalene synthase HpnC; PFAM: Squalene/phytoene synthase; KEGG: sen:SACE_4331 squalene/phytoene synthase.
 
  
 0.972
Caci_6664
KEGG: sen:SACE_4327 squalene--hopene cyclase; TIGRFAM: squalene-hopene cyclase; squalene/oxidosqualene cyclase; PFAM: Prenyltransferase/squalene oxidase.
 
   
 0.962
Caci_6662
TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnH; PFAM: Radical SAM domain protein; KEGG: sco:SCO6766 hypothetical protein.
 
  
 0.941
Caci_6665
PFAM: Polyprenyl synthetase; KEGG: sen:SACE_4328 dimethylallyltranstransferase / geranyltranstransferase / geranylgeranyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family.
 
   
 0.904
Caci_6663
KEGG: sen:SACE_4326 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate reductase, 4Fe-4S protein (partial match).
     
 0.809
Caci_6661
Hypothetical protein.
       0.572
Caci_6669
PFAM: polysaccharide deacetylase; KEGG: sco:SCO1129 secreted deacetylase.
       0.509
Caci_4971
PFAM: Polyprenyl synthetase; KEGG: sen:SACE_3979 dimethylallyltranstransferase / geranyltranstransferase / geranylgeranyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family.
 
   
 0.433
Caci_5921
PFAM: Polyprenyl synthetase; KEGG: sgr:SGR_2263 putative polyprenyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
 
   
 0.424
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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