STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_6688PFAM: ROK family protein; KEGG: sco:SCO1171 xylose repressor. (406 aa)    
Predicted Functional Partners:
Caci_0661
PFAM: ROK family protein; KEGG: msm:MSMEG_1363 glucokinase.
  
     0.774
Caci_2663
PFAM: ROK family protein; KEGG: mbb:BCG_0699 putative sugar kinase.
  
     0.774
Caci_2620
PFAM: ROK family protein; KEGG: rsp:RSP_1441 GntR family regulatory protein.
  
     0.773
Caci_3774
PFAM: ROK family protein; KEGG: sma:SAV_5420 transcriptional regulator.
  
     0.773
Caci_7907
PFAM: ROK family protein; KEGG: sgr:SGR_6266 ROK family transcriptional regulator.
  
     0.772
xylA
KEGG: ace:Acel_2064 xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the xylose isomerase family.
 
   
 0.766
Caci_1177
PFAM: ROK family protein; KEGG: lbr:LVIS_2120 transcriptional regulator/sugar kinase.
  
     0.765
xylB-2
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: stp:Strop_3591 xylulokinase.
 
  
 0.744
Caci_6689
Hypothetical protein.
       0.482
xylB
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: stp:Strop_3591 xylulokinase.
 
  
 0.449
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.