STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_6723PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aau:AAur_1454 putative transmembrane lipoprotein LplC. (284 aa)    
Predicted Functional Partners:
Caci_6722
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aau:AAur_1453 putative transmembrane lipoprotein LplB.
 
 0.984
Caci_0128
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aau:AAur_1453 putative transmembrane lipoprotein LplB.
 
 0.959
Caci_3819
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV_1456 multiple sugar ABC transport permease protein.
 
 0.959
Caci_4681
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tfu:Tfu_1610 putative transport system integral membrane protein.
 
 0.959
Caci_4937
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO5687 transport system integral membrane protein.
 
 0.959
Caci_6724
PFAM: extracellular solute-binding protein family 1; KEGG: rsa:RSal33209_0117 ABC-type sugar transport system, periplasmic component.
 
 
 0.931
Caci_6730
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sen:SACE_4594 ABC transporter sugar permease.
  
  
 
0.919
Caci_0130
PFAM: extracellular solute-binding protein family 1; KEGG: aau:AAur_1455 putative lipoprotein precursor LplA.
 
 
 0.820
Caci_3807
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: efa:EF2233 ABC transporter, permease protein.
 
 0.798
Caci_4938
KEGG: tfu:Tfu_1609 ABC-type sugar transport system periplasmic component.
 
 
 0.795
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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