STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_6727KEGG: rsa:RSal33209_0108 hypothetical protein. (712 aa)    
Predicted Functional Partners:
Caci_2455
Chromosome segregation and condensation protein ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
 
 0.734
Caci_6134
PFAM: glycoside hydrolase family 18; Carbohydrate- binding family V/XII; SMART: chitinase II; Carbohydrate-binding family V/XII; KEGG: ace:Acel_1460 glycosyl hydrolase family chitinase.
    
 
 0.727
Caci_6725
PFAM: polysaccharide lyase 8 alpha-helical; polysaccharide lyase family 8; KEGG: sgr:SGR_291 hyaluronidase.
     
 0.567
Caci_6726
KEGG: sma:SAV_1407 hypothetical protein.
       0.550
Caci_7799
PFAM: UvrD/REP helicase; HRDC domain protein; SMART: HRDC domain protein; KEGG: sma:SAV_3072 ATP-dependent DNA helicase.
  
 
 0.525
Caci_6724
PFAM: extracellular solute-binding protein family 1; KEGG: rsa:RSal33209_0117 ABC-type sugar transport system, periplasmic component.
       0.517
Caci_6723
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aau:AAur_1454 putative transmembrane lipoprotein LplC.
  
    0.433
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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