STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_6734PFAM: Amylo-alpha-16-glucosidase; KEGG: art:Arth_3761 amylo-alpha-1,6-glucosidase. (708 aa)    
Predicted Functional Partners:
Caci_6732
PFAM: extracellular solute-binding protein family 1; KEGG: sen:SACE_4592 ABC transporter sugar-binding protein.
 
     0.704
Caci_6731
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sen:SACE_4593 ABC transporter sugar permease.
 
     0.651
Caci_6733
PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: nca:Noca_0471 LacI family transcription regulator.
 
     0.597
Caci_6730
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sen:SACE_4594 ABC transporter sugar permease.
 
     0.513
Caci_1345
PFAM: glycoside hydrolase family 38; glycosyl hydrolase 38 domain protein; Glycoside hydrolase family 38 central region; KEGG: stp:Strop_1191 glycoside hydrolase family protein.
  
    0.412
Caci_6735
SMART: WD-40 repeat protein; KEGG: fal:FRAAL6340 WD-40 repeat-containing protein.
       0.407
Caci_3233
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position. Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
  
 0.405
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
  
 0.405
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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