STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_6798TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: sco:SCO2569 hypothetical protein. (283 aa)    
Predicted Functional Partners:
Caci_8026
PFAM: Dak phosphatase; KEGG: sma:SAV_2674 dihydroxyacetone kinase.
 
 0.997
Caci_6797
PFAM: Endoribonuclease L-PSP; KEGG: scl:sce6306 hypothetical protein.
       0.536
Caci_5954
PFAM: Transglycosylase domain protein; Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: sgr:SGR_4438 putative secreted protein.
  
     0.448
disA
Protein of unknown function DUF147; Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c-di-AMP likely acts as a signaling molecule that may couple DNA integrity with a cellular process.
  
    0.410
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.