STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_6806PFAM: Peptidoglycan-binding domain 1 protein; KEGG: predicted protein. (349 aa)    
Predicted Functional Partners:
Caci_0430
KEGG: sma:SAV_94 hypothetical protein.
  
     0.753
Caci_0844
KEGG: hypothetical protein.
  
     0.752
Caci_4387
Hypothetical protein; KEGG: proteophosphoglycan 5.
 
     0.729
Caci_5310
KEGG: mjl:Mjls_2065 translation initiation factor IF-2.
  
     0.659
Caci_6805
KEGG: cur:cur_1817 putative Fe-S oxidoreductase.
       0.658
Caci_1280
Hypothetical protein; KEGG: proteophosphoglycan 5.
  
     0.608
Caci_5784
Putative signal transduction protein with EFhand domain; PFAM: Calcium-binding EF-hand-containing protein; SMART: Calcium-binding EF-hand-containing protein; KEGG: calmodulin; K02183 calmodulin.
  
     0.530
Caci_8696
Hypothetical protein; KEGG: spt6; SH2 domain-containing protein; K11292 transcription elongation factor SPT6.
 
     0.479
Caci_2930
SMART: Appr-1-p processing domain protein; KEGG: sgr:SGR_991 hypothetical protein.
 
     0.455
Caci_7693
Phosphoprotein phosphatase; KEGG: lil:LA2450 outermembrane protein; PFAM: leucine-rich repeat protein; SMART: leucine-rich repeat-containing protein typical subtype.
  
     0.402
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.